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project:bioosm:start [2018/06/07 23:21] – [K cemu to je] sumie-dhproject:bioosm:start [2018/11/24 19:24] – implementace RSS sachy
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 name=Biologicke zbrane ve vasem okoli| name=Biologicke zbrane ve vasem okoli|
 image= bioosm:bioosm.jpg?400 | image= bioosm:bioosm.jpg?400 |
-founder=[[user:sachy:start]]|+founder=[[user:sachy]]|
 interested=[[user:sumie-dh]]| interested=[[user:sumie-dh]]|
-sw=CC|+sw=CC-BY-SA|
 hw=N/A| hw=N/A|
 status=active}} status=active}}
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 ==== K cemu to je ==== ==== K cemu to je ====
  
-  *  interaktivni mapa vhodna k zobrazovani vetsiho mnozstvi fotek, brmlabi wiki, sluzby typu phtagr a soup se zdaly nevhodne k publikaci tohoto typu obsahu, wiki by byla prilis obludna, na beznych sdilecich obrazkovych sluzbach se neda nic pohodlne dohledavat a davat tam biologicky smysluplne a prehledne popisky +  * interaktivni mapa vhodna k zobrazovani vetsiho mnozstvi fotek, brmlabi wiki, sluzby typu phtagr a soup se zdaly nevhodne k publikaci tohoto typu obsahu, wiki by byla prilis obludna, na beznych sdilecich obrazkovych sluzbach se neda nic pohodlne dohledavat a davat tam biologicky smysluplne a prehledne popisky 
-  *  monitoring zivocichu a rostlin podle zajmu prispevovatelu  +  * monitoring zivocichu a rostlin podle zajmu prispevovatelu  
-  *  snadne klikaci katalogovani nalezu skrze Tellico nevyzadujici coding skills +  * snadne klikaci katalogovani nalezu skrze Tellico nevyzadujici coding skills 
-  *  TODO - jednoduche selekce zajmoveho okruhu subjektu [napr. podle rodu, biotopu, datumu] na mape+  * TODO - jednoduche selekce zajmoveho okruhu subjektu [napr. podle rodu, biotopu, datumu] na mape
   * procvicovani temne magie commandu grep, sed a regexpu   * procvicovani temne magie commandu grep, sed a regexpu
  
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 Podklad jsou [[https://openstreetmap.org|OSM]], ktere maji API [[http://openlayers.org/|OpenLayers]] jez umoznuje pridavat do mapy vlastni body, vrstvy... Podklad jsou [[https://openstreetmap.org|OSM]], ktere maji API [[http://openlayers.org/|OpenLayers]] jez umoznuje pridavat do mapy vlastni body, vrstvy...
  
-Jednotliva pozorovani jsou v databazi [[http://tellico-project.org/|Tellico]]. Udelal jsem script parse_tellico.sh, ktery z .tc databaze (je to vlastne ZIP s XML uvnitr) vyparsuje jednotlive polozky a vygeneruje HTML soubor s mapou a podadresar "det" s HTML strankami s detaily jednotlivych pozorovani.+Jednotliva pozorovani jsou v databazi [[http://tellico-project.org/|Tellico]]. Udelal jsem script parse_tellico.sh, ktery z .tc databaze (je to vlastne ZIP s XML uvnitr) vyparsuje jednotlive polozky a vygeneruje HTML soubor s mapou a podadresar "det" s HTML strankami s detaily jednotlivych pozorovani. Vygeneruje se taky JSON s vyparsovanymi polozkami, ktery lze z webu projektu stahnout. 
 + 
 +Pro nadsence je vygenerovany taky prehled prispevku plainlog.htm serazeny dle data pridani do databaze. 
 + 
 +Pokud chcete vedet co je noveho, odebirejte projektovou [[http://brmlab.s0c4.net/bioosm/bioosm.rss|RSS]]
  
 Obrazky v plnem rozliseni jsou v podadresari "img", nahledy v "simg". Videa jsou nahrana na YT a misto nahledu maji generickou ikonu. Obrazky v plnem rozliseni jsou v podadresari "img", nahledy v "simg". Videa jsou nahrana na YT a misto nahledu maji generickou ikonu.
  
-Pozorovani ktera se v mape zobrazi lze filtrovat dle prislusnosti k radu (bakterie, zvirata, rostliny,...) pripadne cimkoli co lze grepnout z Tellico XML.+Pozorovani ktera se v mape zobrazi lze filtrovat dle prislusnosti k radu (bakterie, zvirata, rostliny,...) az po prislusnost k jednotlivym druhum.
  
 === Tellico sample database === === Tellico sample database ===
Line 97: Line 101:
  
 ==== parse_tellico.sh ==== ==== parse_tellico.sh ====
-<code bash>+<code bash parse_tellico.sh>
 #!/bin/bash #!/bin/bash
 # Parse Tellico database to BioOSM index.htm # Parse Tellico database to BioOSM index.htm
Line 103: Line 107:
 # Print result to stdout # Print result to stdout
 # #
-# Generate minis in simg folder 
 # find ./ -type f -exec mogrify -verbose -layers Dispose -resize 128\>x128\> -quality 100% {} + # find ./ -type f -exec mogrify -verbose -layers Dispose -resize 128\>x128\> -quality 100% {} +
 # #
 +# // vectorLayer.removeFeatures(atol)
 +# // map.removeLayer(vectorLayer)
 # #
 # #
 # Creates: # Creates:
-#   (to stdout) index.htm file with the map and static entries+#   (to stdout) HTML file with the map and static entries
 #   ./det/ID.htm details of each and every entry #   ./det/ID.htm details of each and every entry
 +#   ./bioosm.json JSON of all entries
 +#   ./bioosm.rss updated RSS feed
 +#   ./plainlog.htm sorted entries for easy human/alg
 # #
  
 rm -rfv "./det/*" rm -rfv "./det/*"
 mkdir -p "./det" mkdir -p "./det"
-#cat "./index_head.htm"+ 
 +ICON_animalia="animalia.png" 
 +ICON_bacteria="bacteria.png" 
 +ICON_fungi="fungi.png" 
 +ICON_chromista="chromista.png" 
 +ICON_plantae="plantae.svg" 
 +ICON_plostenkoid="plostenkoid.png" 
 +ICON_protista="protista.png" 
 +ICON_biohazard="biohazard.svg" 
 + 
 +json="" 
 + 
 +rss=$'<?xml version="1.0" encoding="UTF-8" ?>\n' 
 +rss+=$'<rss version="2.0">\n' 
 +rss+=$'<channel>\n' 
 +rss+=$'<title>Brmlab BioOSM RSS feed</title>\n' 
 +rss+=$'<description>New entries on BioOSM database</description>\n' 
 +rss+=$'<link>https://bioosm.s0c4.net</link>\n' 
 +rss+=$'<lastBuildDate></lastBuildDate>\n' 
 +rss+=$'<pubDate></pubDate>\n' 
 +rss+=$'<ttl>86400</ttl>\n' 
 + 
 +Return icon by Regnum 
 +function geticon () { 
 + case "$1" in 
 + "Animalia"
 + echo "$ICON_animalia";; 
 + "Bacteria"
 + echo "$ICON_bacteria";; 
 + "Fungi"
 + echo "$ICON_fungi";; 
 + "Chromista"
 + echo "$ICON_chromista";; 
 + "Plantae"
 + echo "$ICON_plantae";; 
 + "Protista"
 + echo "$ICON_protista";; 
 + *) 
 + echo "$ICON_biohazard";; 
 + esac 
 +
 + 
 +function safehtml () { 
 + echo "$1" | sed -e "s/'/\&#39;/g" -e 's/"/\&#34;/g' -e 's/</\&lt;/g' -e 's/>/\&gt;/g' -e 's/^[ ]*//g' -e 's/[ ]*$//g' 
 +
 + 
 +i=1 # GLOBAL increment must persist multiple spagety() calls; incremented to infinity 
 +# Core function generating entries matching selection criteria (ie Kingdom) 
 +# !!! BEZ ODSAZENI !!! 
 +# $1 = list of entries 
 +# $2 = layer name 
 +# $3 = icon of the points 
 +function spagety () { 
 + 
 + bylo="" # Minula pozice 
 + sam="" # HTML samostatneho zaznamu 
 + osam="" # predchozi $sam 
 + spoj="" # HTML had z popisu stejnych pozic 
 + ospoj="" # Predchozi $spoj 
 + ox="" # Old X 
 + oy="" # Old Y 
 + datelog="" # Entries sorted by date for plaintext log 
 + json="var data='{\"version\":\"$(date --rfc-3339=seconds)\",\"arma\":[" 
 + 
 + while IFS='' read -r radek || [[ -n "$radek" ]]; do 
 + co=$(echo "$radek" | grep -oe ' <title>.*</title> ' | sed -E 's/( )*<(\/)?title>( )*//g'
 + co=$(safehtml "$co"
 + obr=$(echo "$radek" | grep -oe ' <image>.*</image> ' | sed -E 's/( )*<(\/)?image>( )*//g' | grep -oPe '[^/]*$'
 + obr=$(safehtml "$obr"
 + kde=$(echo "$radek" | grep -oe '<locality>.*</locality>' | grep -oPe '[0-9]{2}\.[0-9]{1,10}[, ]*[0-9]{2}\.[0-9]{1,10}'
 + kde=$(safehtml "$kde"
 + kdex=$(echo "$kde" | grep -oPe '[0-9]{2}\.[0-9]{1,10}$'
 + kdex=$(safehtml "$kdex"
 + kdey=$(echo "$kde" | grep -oPe '^[0-9]{2}\.[0-9]{1,10}'
 + kdey=$(safehtml "$kdey"
 + kdy=$(echo "$radek" | grep -oe ' <taken-date>.*</taken-date> ' | sed -E 's/( )*<(\/)?taken-date>( )*//g' | sed -E 's/([0-9]+)\.([0-9]+)\.([0-9]{4})/\3-\2-\1/g' | sed -E 's/-([0-9])-/-0\1-/g' | sed -E 's/-([0-9])$/-0\1/g'
 + kdy=$(safehtml "$kdy"
 + skop_typ=$(echo "$radek" | grep -oe ' <new-field-1>.*</new-field-1> ' | sed -E 's/( )*<(\/)?new-field-1>( )*//g'
 + skop_typ=$(safehtml "$skop_typ"
 + skop=$(echo "$radek" | grep -oe ' <microscope>.*</microscope> ' | sed -E 's/( )*<(\/)?microscope>( )*//g'
 + skop=$(safehtml "$skop"
 + imp=$(echo "$radek" | grep -oe ' <new-field-3>.*</new-field-3> ' | sed -E 's/( )*<(\/)?new-field-3>( )*//g'
 + imp=$(safehtml "$imp"
 + reg=$(echo "$radek" | grep -oe ' <new-field-4>.*</new-field-4> ' | sed -E 's/( )*<(\/)?new-field-4>( )*//g'
 + reg=$(safehtml "$reg"
 + phy=$(echo "$radek" | grep -oe ' <phylum>.*</phylum> ' | sed -E 's/( )*<(\/)?phylum>( )*//g'
 + phy=$(safehtml "$phy"
 + cla=$(echo "$radek" | grep -oe ' <class>.*</class> ' | sed -E 's/( )*<(\/)?class>( )*//g'
 + cla=$(safehtml "$cla"
 + ord=$(echo "$radek" | grep -oe ' <order>.*</order> ' | sed -E 's/( )*<(\/)?order>( )*//g'
 + ord=$(safehtml "$ord"
 + fam=$(echo "$radek" | grep -oe ' <family>.*</family> ' | sed -E 's/( )*<(\/)?family>( )*//g'
 + fam=$(safehtml "$fam"
 + gen=$(echo "$radek" | grep -oe ' <genus>.*</genus> ' | sed -E 's/( )*<(\/)?genus( )*>//g'
 + gen=$(safehtml "$gen"
 + spe=$(echo "$radek" | grep -oe ' <species>.*</species> ' | sed -E 's/( )*<(\/)?species>( )*//g'
 + spe=$(safehtml "$spe"
 + loc=$(echo "$radek" | grep -oe ' <locality---plaintext>.*</locality---plaintext> ' | sed -E 's/( )*<(\/)?locality---plaintext>( )*//g'
 + loc=$(safehtml "$loc"
 + des=$(echo "$radek" | grep -oe ' <description>.*</description> ' | sed -E 's/( )*<(\/)?description>( )*//g'
 + des=$(safehtml "$des"
 + vid=$(echo "$radek" | grep -oe ' <videolink>.*</videolink> ' | sed -E 's/( )*<(\/)?videolink>( )*//g'
 + vid=$(safehtml "$vid"
 + bio=$(echo "$radek" | grep -oe ' <biotope>.*</biotope> ' | sed -E 's/( )*<(\/)?biotope>( )*//g'
 + bio=$(safehtml "$bio"
 + eng=$(echo "$radek" | grep -oe ' <enlargement>.*</enlargement> ' | sed -E 's/( )*<(\/)?enlargement>( )*//g'
 + eng=$(safehtml "$eng"
 + obs=$(echo "$radek" | grep -oe ' <observer>.*</observer> ' | sed -E 's/( )*<(\/)?observer>( )*//g'
 + obs=$(safehtml "$obs"
 + lnk=$(echo "$radek" | grep -oe ' <localitylink>.*</localitylink> ' | sed -E 's/( )*<(\/)?localitylink>( )*//g'
 + lnk=$(safehtml "$lnk"
 + detid=$(echo "brmlab$co$obr$kde$kdy" | md5sum | grep -oe '[a-zA-Z0-9]*'
 + 
 + if [[ "$kdex" = "" ]]; then 
 + >&2 echo $(echo "$radek" | grep -oe '<locality>.*</locality>') " $co" 
 + continue; 
 + fi 
 + zkurvenetellico=$(echo "$obr" | grep -oe '\.[a-zA-Z]*$'
 + if [[ "$zkurvenetellico" = ".jpeg" ]]; then 
 + >&2 echo "$obr $co" 
 + continue; 
 + fi 
 + 
 + if [[ "$spe" = "sp." ]]; then 
 + wikisp="https://en.wikipedia.org/wiki/$gen" 
 + else 
 + wikisp="https://en.wikipedia.org/wiki/$gen $spe" 
 + fi 
 + 
 + json+="{" 
 + json+=" \"qualis\":\"$co\"," 
 + json+=" \"imperium\":\"$imp\"," 
 + json+=" \"regnum\":\"$reg\"," 
 + json+=" \"phylum\":\"$phy\"," 
 + json+=" \"classis\":\"$cla\"," 
 + json+=" \"ordo\":\"$ord\"," 
 + json+=" \"familia\":\"$fam\"," 
 + json+=" \"genus\":\"$gen\"," 
 + json+=" \"specie\":\"$spe\"," 
 + json+=" \"locus\":\"$kde\"," 
 + json+=" \"x\":\"$kdex\"," 
 + json+=" \"y\":\"$kdey\"," 
 + json+=" \"locplain\":\"$loc\"," 
 + json+=" \"depictio\":\"$des\"," 
 + json+=" \"quando\":\"$kdy\"," 
 + json+=" \"obr\":\"$obr\"," 
 + json+=" \"micro\":\"$skop\"," 
 + json+=" \"microtyp\":\"$skop_typ\"," 
 + json+=" \"vid\":\"$vid\"," 
 + json+=" \"bio\":\"$bio\"," 
 + json+=" \"amp\":\"$eng\"," 
 + json+=" \"spec\":\"$obs\"," 
 + json+=" \"detid\":\"$detid\"," 
 + json+=" \"lnk\":\"$lnk\"" # Lastone without ',' 
 + json+="}," 
 + 
 + 
 + rss+=$'<item>\n' 
 + rss+=$'  <title>'"$co"$'</title>\n' 
 + rss+=$'  <description>'"$des"$'</description>\n' 
 + rss+=$'  <link>http://brmlab.s0c4.net/bioosm/det/'"$detid"$'.htm</link>\n' 
 + rss+=$'  <guid isPermaLink="false">'"$detid"$'</guid>\n' 
 + rss+=$'  <pubDate>'"$kdy"$'</pubDate>\n' 
 + rss+=$'</item>\n' 
 + 
 + 
 + # Generate detail page 
 + detid=$(echo "brmlab$co$obr$kde$kdy" | md5sum | grep -oe '[a-zA-Z0-9]*'
 + detpg="<html><head>" 
 + detpg="$detpg<meta http-equiv='Content-Type' content='text/html; charset=utf-8'>" 
 + detpg="$detpg<link rel='stylesheet' href='../style.css' type='text/css'>" 
 + detpg="$detpg<title>Brmlab - BioOSM $co $kde</title>" 
 + detpg="$detpg</head><body>" 
 + detpg="$detpg<table class='dettbl'><tr>" 
 + detpg="$detpg<td><h1>$co (<a href='$wikisp' target='_blank'>wiki</a>)</h1>" 
 + if [[ "$imp" != "" ]]; then 
 + detpg="$detpg<b>Imperium:</b> <a href='https://en.wikipedia.org/wiki/$imp' target='_blank'>$imp</a><br>" 
 + fi 
 + if [[ "$reg" != "" ]]; then 
 + detpg="$detpg<b>Regnum:</b> <a href='https://en.wikipedia.org/wiki/$reg' target='_blank'>$reg</a><br>" 
 + fi 
 + if [[ "$phy" != "" ]]; then 
 + detpg="$detpg<b>Phylum:</b> <a href='https://en.wikipedia.org/wiki/$phy' target='_blank'>$phy</a><br>" 
 + fi 
 + if [[ "$cla" != "" ]]; then 
 + detpg="$detpg<b>Classis:</b> <a href='https://en.wikipedia.org/wiki/$cla' target='_blank'>$cla</a><br>" 
 + fi 
 + if [[ "$ord" != "" ]]; then 
 + detpg="$detpg<b>Ordo:</b> <a href='https://en.wikipedia.org/wiki/$ord' target='_blank'>$ord</a><br>" 
 + fi 
 + if [[ "$fam" != "" ]]; then 
 + detpg="$detpg<b>Familia:</b> <a href='https://en.wikipedia.org/wiki/$fam' target='_blank'>$fam</a><br>" 
 + fi 
 + if [[ "$gen" != "" ]]; then 
 + detpg="$detpg<b>Genus:</b> <a href='https://en.wikipedia.org/wiki/$gen' target='_blank'>$gen</a><br>" 
 + fi 
 + if [[ "$spe" != "" ]]; then 
 + detpg="$detpg<b>Specie:</b> <a href='$wikisp' target='_blank'>$spe</a><br>" 
 + fi 
 + detpg="$detpg<br>" 
 + if [[ "$kdy" != "" ]]; then 
 + detpg="$detpg<b>Quando:</b> $kdy<br>" 
 + fi 
 + if [[ "$lnk" != "" ]]; then 
 + loc="<a href=\"$lnk\" target=\"_blank\">$loc</a>" # Yes, escaped " 
 + fi 
 + detpg="$detpg<b>Locus:</b> $kde ($loc)<br>" 
 + if [[ "$obs" != "" ]]; then 
 + detpg="$detpg<b>Spectator:</b> $obs<br>" 
 + fi 
 + if [[ "$bio" != "" ]]; then 
 + detpg="$detpg<b>Biotope:</b> $bio<br>" 
 + fi 
 + detpg="$detpg<br>" 
 + if [[ "$skop" != "" ]]; then 
 + detpg="$detpg<b>Microscopium:</b> $skop ($skop_typ)<br>" 
 + fi 
 + if [[ "$eng" != "" ]]; then 
 + detpg="$detpg<b>Amplificatio:</b> $eng<br>" 
 + fi 
 + detpg="$detpg<br>" 
 + if [[ "$des" != "" ]]; then 
 + detpg="$detpg<b>Depictio:</b> $des<br>" 
 + fi 
 + if [[ "$vid" != "" ]]; then 
 + detpg="$detpg<b>Video:</b> <a href=\"$vid\" target=\"_blank\">$vid</a><br>" 
 + fi 
 + detpg="$detpg<br><b>More on <a href=\"../\">BioOSM map</a></b><br>" 
 + 
 + detpg="$detpg</td><td style='min-width:66%'>" 
 + if [[ "$obr" != "" ]]; then 
 + detpg="$detpg<a href=\"../img/$obr\"><img src=\"../img/$obr\" alt=\"$co\" class='detimg'></a>" 
 + else 
 + if [[ "$vid" != "" ]]; then 
 + detyt=$(echo "$vid" | sed -e 's/youtube.com\/watch?v=/youtube.com\/embed\//g'
 + detpg="$detpg<iframe class='detvid' src='$detyt' frameborder='0' allow='encrypted-media' allowfullscreen></iframe>" 
 + else 
 + detpg="$detpg<img src=\"../$3\" alt=\"video\" class='detimg'>" 
 + fi 
 + fi 
 + detpg="$detpg</td></tr></table>" 
 + detpg="$detpg</body></html>" 
 + echo "$detpg" > "./det/$detid.htm" 
 + 
 + # Plain log of entries 
 + datelog+="$kdy $kde <a href='./det/$detid.htm' target='_blank'>$co</a><br>\n" 
 + 
 + >&2 echo "$co $obs" 
 + 
 + ox="$kdex" 
 + oy="$kdey" 
 + 
 + i=$(($i+1)) 
 + 
 + done <<< $(echo "$1") # Zere parametr spaget, nikoli $1 scriptu !!! 
 + echo "$json{}]}" | sed -e "s/^var data='//g" > "./bioosm.json" 
 + echo "$json{}]}'" 
 + 
 + rss+=$'</channel>\n' 
 + rss+=$'</rss>\n' 
 + echo "$rss" > "./bioosm.rss" 
 + 
 +} # KONEC FCE SPAGETY 
 + 
  
 # Parse Tellico file to list of entries # Parse Tellico file to list of entries
Line 122: Line 394:
 # Sorted unique Kingdoms (to be passed as selection criteria) # Sorted unique Kingdoms (to be passed as selection criteria)
 kingdoms=$(echo "$praseTC" | grep -oe ' <new-field-4>.*</new-field-4> ' | sed -E 's/( )*<(\/)?new-field-4>( )*//g' | sort | uniq) kingdoms=$(echo "$praseTC" | grep -oe ' <new-field-4>.*</new-field-4> ' | sed -E 's/( )*<(\/)?new-field-4>( )*//g' | sort | uniq)
- 
  
 echo '<!DOCTYPE html>' echo '<!DOCTYPE html>'
Line 128: Line 399:
 echo '<head>' echo '<head>'
 echo ' <meta http-equiv="Content-Type" content="text/html; charset=utf-8">' echo ' <meta http-equiv="Content-Type" content="text/html; charset=utf-8">'
-echo ' <title>BioOSM</title>'+echo ' <title>brmlab - BioOSM</title>'
 echo ' <link rel="stylesheet" href="./style.css" type="text/css">' echo ' <link rel="stylesheet" href="./style.css" type="text/css">'
 +echo ' <link rel="favicon" href="./'$ICON_biohazard'">'
 echo ' <script src="./OpenLayers.js"></script>' echo ' <script src="./OpenLayers.js"></script>'
 echo '</head>' echo '</head>'
 +echo '<body>'
 +# Generate select
 +echo "<div id='plainlog'><b><a href='./bioosm.rss'>RSS feed</a><br><a href='./plainlog.htm'>Quick news log</a></b></div>"
 +echo "<h1 id='title'>BioOSM - arma biologica in tuis vicinia</h1>"
 +ksel="<select id='reg' onChange='genphy()'>"
 +ksel="$ksel<option value='ALL' selected>ALL</option>"
 +while IFS='' read -r king || [[ -n "$king" ]]; do
 + ksel="$ksel<option value='"$king"'>$king</option>"
 +done <<< $(echo "$kingdoms")
 +ksel="$ksel</select>"
 +echo "Regnum: $ksel "
  
-echo "<body>" +echo "Phylum: <select id='phy' onChange='gencla()'><option>ALL</option></select> " 
- echo "<h1 id='title'>BioOSM - armis biologica in tuis vicinia</h1>" +echo "Classis: <select id='cla' onChange='genord()'><option>ALL</option></select> " 
- +echo "Ordo: <select id='ord' onChange='genfam()'><option>ALL</option></select> " 
- # Generate select +echo "Familia: <select id='famonChange='gengen()'><option>ALL</option></select> " 
- ksel="<select id='kin' onChange='kinchange()'>" +echo "Genus: <select id='genonChange='genspe()'><option>ALL</option></select>" 
- ksel="$ksel<option value='ALLselected>ALL</option>" +echo "Specie: <select id='spe' onChange='armageddon()'><option>ALL</option></select>" 
- while IFS='' read -r king || [[ -n "$king" ]]; do +echo "<br><input type='button' value='Platyhelminthes' onClick='plostenkoidy()'>
- ksel="$ksel<option value='"$king"'>$king</option>" +#echo "<input type='button' value='Bugs' onClick='buggy()'>
- done <<< $(echo "$kingdoms"+echo "<br><br><div id='map' class='smallmap'></div>" 
- ksel="$ksel</select>" +echo "<br><p>Welcome! You can download the <a href='./bioosm.json' target='_blank'>source data as JSON file</a><br>" 
- echo "Regnum: $ksel | +echo "This site is owned by members of the <a href='https://brmlab.cz' target='_blank'>hackerspace brmlab</a>. See our wiki page for <a href='https://brmlab.cz/project/bioosm/start' target='_blank'>details and contact info</a><br>License: CC-BY-SA</p>"
- echo "<input type='button' value='Plostenkoidy' onClick='plostenkoid()'><br><br>+
- +
-  echo "<div id='map' class='smallmap'></div>"+
 echo "</body>" echo "</body>"
  
-echo '<script>+echo "<script>"
 echo 'map = new OpenLayers.Map("map");' echo 'map = new OpenLayers.Map("map");'
 echo 'map.addLayer(new OpenLayers.Layer.OSM());' echo 'map.addLayer(new OpenLayers.Layer.OSM());'
Line 166: Line 445:
 echo ' new OpenLayers.Geometry.Point(14.41876, 50.10554).transform(epsg4326, projectTo),' echo ' new OpenLayers.Geometry.Point(14.41876, 50.10554).transform(epsg4326, projectTo),'
 echo ' {description:"Atomovy atol Brmkini"} ,' echo ' {description:"Atomovy atol Brmkini"} ,'
-echo ' {externalGraphic: "./biohazard.svg", graphicHeight:24, graphicWidth:24, graphicXOffset:-12, graphicYOffset:-12},'+echo ' {externalGraphic: "./biohazard.svg", graphicHeight:8, graphicWidth:8, graphicXOffset:-4, graphicYOffset:-4},'
 echo ');' echo ');'
 echo 'vectorLayer.addFeatures(atol);' echo 'vectorLayer.addFeatures(atol);'
Line 172: Line 451:
 echo "map.addLayer(vectorLayer);" echo "map.addLayer(vectorLayer);"
  
 +spagety "$praseTC" "ALL" "$ICON_biohazard"
  
 +echo '</script>'
 +echo '<script src="./bioosm.js"></script>' # Must be after JSON
 +echo "</html>"
  
-i=1 GLOBAL increment must persist multiple spagety() calls; incremented to infinity +Create plaintext log 
-# Core function generating entries matching selection criteria (ie Kingdom) +dateloghtm="<html><head>" 
-# !!! BEZ ODSAZENI !!! +dateloghtm+="<meta http-equiv='Content-Type' content='text/html; charset=utf-8'>" 
-# $1 list of entries +dateloghtm+="<link rel='stylesheet' href='./style.css' type='text/css'>" 
-# $2 layer name +dateloghtm+="<title>Brmlab - BioOSM plaintext log</title>" 
-# $3 icon of the points +dateloghtm+="</head><body>" 
-function spagety () {+datelogsort=$(echo -e "$datelog" | sort -r | uniq) 
 +dateloghtm+="$datelogsort" 
 +dateloghtm+="</body></html>" 
 +echo "$dateloghtm" > "./plainlog.htm" 
 +</code>
  
-bylo="" # Minula pozice +==== bioosm.js ====
-sam="" # HTML samostatneho zaznamu +
-osam="" # predchozi $sam +
-spoj="" # HTML had z popisu stejnych pozic +
-ospoj="" # Predchozi $spoj +
-ox="" # Old X +
-oy="" # Old Y+
  
-while IFS='' read -r radek || [[ -n "$radek" ]]; do+<code javascript bioosm.js> 
 +var blob=JSON.parse(data) 
 +var arma=blob.arma
  
- co=$(echo "$radek" | grep -oe ' <title>.*</title> ' | sed -E 's/( )*<(\/)?title>( )*//g'+var vectorLayerDynamic new OpenLayers.Layer.Vector('Overlay',{attribution:'<a href="http://brmlab.cz">Brmlab</a>'}); 
- obr=$(echo "$radek" | grep -oe ' <image>.*</image> ' | sed -E 's/)*<(\/)?image>( )*//g| grep -oPe '[^/]*$'+map.addLayer(vectorLayerDynamic);
- kde=$(echo "$radek" | grep -oe '<locality>.*</locality>' | grep -oPe '[0-9]{2}\.[0-9]{1,10}[, ]*[0-9]{2}\.[0-9]{1,10}'+
- kdex=$(echo "$kde" | grep -oPe '[0-9]{2}\.[0-9]{1,10}$'+
- kdey=$(echo "$kde" | grep -oPe '^[0-9]{2}\.[0-9]{1,10}'+
- kdy=$(echo "$radek" | grep -oe ' <taken-date>.*</taken-date> ' | sed -E 's/( )*<(\/)?taken-date>( )*//g'+
- skop_typ=$(echo "$radek" | grep -oe ' <new-field-1>.*</new-field-1> ' | sed -E 's/( )*<(\/)?new-field-1>( )*//g'+
- skop=$(echo "$radek" | grep -oe ' <microscope>.*</microscope> ' | sed -E 's/( )*<(\/)?microscope>( )*//g'+
- imp=$(echo "$radek" | grep -oe ' <new-field-3>.*</new-field-3> ' | sed -E 's/( )*<(\/)?new-field-3>( )*//g'+
- reg=$(echo "$radek" | grep -oe ' <new-field-4>.*</new-field-4> ' | sed -E 's/( )*<(\/)?new-field-4>( )*//g'+
- phy=$(echo "$radek" | grep -oe ' <phylum>.*</phylum> ' | sed -E 's/( )*<(\/)?phylum>( )*//g'+
- cla=$(echo "$radek" | grep -oe ' <class>.*</class> ' | sed -E 's/( )*<(\/)?class>( )*//g'+
- ord=$(echo "$radek" | grep -oe ' <order>.*</order> ' | sed -E 's/( )*<(\/)?order>( )*//g'+
- fam=$(echo "$radek" | grep -oe ' <family>.*</family> ' | sed -E 's/( )*<(\/)?family>( )*//g'+
- gen=$(echo "$radek" | grep -oe ' <genus>.*</genus> ' | sed -E 's/( )*<(\/)?genus( )*>//g'+
- spe=$(echo "$radek" | grep -oe ' <species>.*</species> ' | sed -E 's/( )*<(\/)?species>( )*//g'+
- loc=$(echo "$radek" | grep -oe ' <locality---plaintext>.*</locality---plaintext> ' | sed -E 's/( )*<(\/)?locality---plaintext>( )*//g'+
- des=$(echo "$radek" | grep -oe ' <description>.*</description> ' | sed -E 's/( )*<(\/)?description>( )*//g'+
- vid=$(echo "$radek" | grep -oe ' <videolink>.*</videolink> ' | sed -E 's/( )*<(\/)?videolink>( )*//g'+
- bio=$(echo "$radek" | grep -oe ' <biotope>.*</biotope> ' | sed -E 's/( )*<(\/)?biotope>( )*//g'+
- eng=$(echo "$radek" | grep -oe ' <enlargement>.*</enlargement> ' | sed -E 's/( )*<(\/)?enlargement>( )*//g'+
- obs=$(echo "$radek" | grep -oe ' <observer>.*</observer> ' | sed -E 's/( )*<(\/)?observer>( )*//g')+
  
 +var regsel=document.getElementById("reg")
 +var physel=document.getElementById("phy")
 +var clasel=document.getElementById("cla")
 +var ordsel=document.getElementById("ord")
 +var famsel=document.getElementById("fam")
 +var gensel=document.getElementById("gen")
 +var spesel=document.getElementById("spe")
  
- if [[ "$kdex" = "" ]]; then +var ICON_animalia="animalia.png" 
- >&2 echo $(echo "$radek| grep -oe '<locality>.*</locality>') " $co+var ICON_bacteria="bacteria.png
- continue; +var ICON_fungi="fungi.png
- fi +var ICON_chromista="chromista.png" 
- zkurvenetellico=$(echo "$obr" | grep -oe '\.[a-zA-Z]*$') +var ICON_plantae="plantae.svg" 
- if [[ "$zkurvenetellico" = ".jpeg]]; then +var ICON_plostenkoid="plostenkoid.png
- >&2 echo "$obr $co+var ICON_protista="protista.png
- continue; +var ICON_biohazard="biohazard.svg"
- fi+
  
- +// Return icon by Regnum 
- # Generate detail page +function geticon (a,i
- detid=$(echo "brmlab$co$obr$kde$kdy" | md5sum | grep -oe '[a-zA-Z0-9]*'+{ 
- detpg="<html><head>" + var r="" 
- detpg="$detpg<meta http-equiv='Content-Type' content='text/html; charset=utf-8'>+ if(document.getElementById("reg").value!="ALL") 
- detpg="$detpg<link rel='stylesheet' href='../style.css' type='text/css'>" + r=document.getElementById("reg").value
- detpg="$detpg<title>Brmlab - BioOSM $co $kde</title>" +
- detpg="$detpg</head><body>" +
- detpg="$detpg<table class='dettbl'><tr>" +
- detpg="$detpg<td><h1>$co</h1>" +
- if [[ "$imp" != "" ]]; then +
- detpg="$detpg<b>Imperium:</b> $imp<br>" +
- fi +
- if [[ "$reg" != "" ]]; then +
- detpg="$detpg<b>Regnum:</b> $reg<br>" +
- fi +
- if [[ "$phy" != "" ]]; then +
- detpg="$detpg<b>Phylum:</b> $phy<br>" +
- fi +
- if [[ "$cla" != "" ]]; then +
- detpg="$detpg<b>Classis:</b> $cla<br>" +
- fi +
- if [[ "$ord" != "" ]]; then +
- detpg="$detpg<b>Ordo:</b> $ord<br>" +
- fi +
- if [[ "$fam" != "" ]]; then +
- detpg="$detpg<b>Familia:</b> $fam<br>" +
- fi +
- if [[ "$gen" != "" ]]; then +
- detpg="$detpg<b>Genus:</b> $gen<br>" +
- fi +
- if [[ "$spe" != "" ]]; then +
- detpg="$detpg<b>Specie:</b> $spe<br>" +
- fi +
- detpg="$detpg<br>" +
- if [[ "$kdy" != "" ]]; then +
- detpg="$detpg<b>Quando:</b> $kdy<br>" +
- fi +
- detpg="$detpg<b>Locus:</b> $kde ($loc)<br>" +
- if [[ "$obs" != "" ]]; then +
- detpg="$detpg<b>Spectator:</b> $obs<br>" +
- fi +
- if [[ "$bio" != "" ]]; then +
- detpg="$detpg<b>Biotope:</b> $bio<br>" +
- fi +
- detpg="$detpg<br>" +
- if [[ "$skop" != "" ]]; then +
- detpg="$detpg<b>Microscopium:</b> $skop ($skop_typ)<br>" +
- fi +
- if [[ "$eng" != "" ]]; then +
- detpg="$detpg<b>Amplificatio:</b> $eng<br>" +
- fi +
- detpg="$detpg<br>" +
- if [[ "$des" != "" ]]; then +
- detpg="$detpg<b>Depictio:</b> $des<br>" +
- fi +
- if [[ "$vid" != "" ]]; then +
- detpg="$detpg<b>Video:</b> <a href=\"$vid\" target=\"_blank\">$vid</a><br>" +
- fi +
- detpg="$detpg</td><td>" +
- if [[ "$obr" != "" ]]; then +
- detpg="$detpg<a href=\"../img/$obr\"><img src=\"../img/$obr\" alt=\"$co\" class='detimg'></a>"+
  else  else
- if [[ "$vid" !"" ]]; then +
- detyt=$(echo "$vid" | sed -'s/youtube.com\/watch?v=/youtube.com\/embed\//g'+ r=a[i].regnum 
- detpg="$detpg<iframe class='detvid' src='$detyt' frameborder='0' allow='encrypted-media' allowfullscreen></iframe>+ for(var e=i;e>=0 && a[e].locus==a[i].locus;e--) 
- else + if(a[e].regnum!=a[i].regnum
- detpg="$detpg<img src=\"../$3\" alt=\"video\" class='detimg'>" +
- fi + r="ALL"; 
- fi + break; 
- detpg="$detpg</td></tr></table>" + } 
- detpg="$detpg</body></html>" + }
- echo "$detpg" > "./det/$detid.htm"+
  
- # Pokracujem v hadovi + switch (r) 
- if [[ "$kde" = "$bylo" ]]; then + { 
- sam=""; + case "Animalia"
- spoj="$spoj<tr><td><a href=\"./det/$detid.htm\" target=\"_blank\">+ return ICON_animalia
- if [[ "$obr!= "" ]]; then + case "Bacteria"
- spoj="$spoj<img src=\"./simg/$obr\" class=\"hadimg\"></a></td>" + return ICON_bacteria; 
- else + case "Fungi": 
- spoj="$spoj<img src=\"./$3\" class=\"hadimg\"></a></td>+ return ICON_fungi; 
- fi + case "Chromista": 
- spoj="$spoj<td>$co<br>$kdy</td>+ return ICON_chromista; 
- spoj="$spoj</tr>" + case "Plantae": 
- ox="$kdex+ return ICON_plantae; 
- oy="$kdey" + case "Protista"
- continue; + return ICON_protista; 
- fi+ default: 
 + return ICON_biohazard 
 + } 
 +}
  
- # Bud prvni zaznam, nebo zmena pozice+function genphy() { 
 + physel.innerHTML="<option>ALL</option>" 
 + clasel.innerHTML="<option>ALL</option>" 
 + ordsel.innerHTML="<option>ALL</option>" 
 + famsel.innerHTML="<option>ALL</option>" 
 + gensel.innerHTML="<option>ALL</option>" 
 + spesel.innerHTML="<option>ALL</option>"
  
- # Predchozi pozice jen zaznam? + var phyarr=[] 
- if [[ "$sam" != "" ]]; then + for (var i=0;i<arma.length-1;i++) 
- echo "var n$i = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point($ox,$oy).transform(epsg4326,projectTo),{description:'"$sam"'},{externalGraphic:'./$3',graphicHeight:24,graphicWidth:24,graphicXOffset:-12,graphicYOffset:-12});" +
- echo "$2.addFeatures(n$i);" + if(regsel.value==arma[i].regnum && arma[i].phynum!="") 
- spoj="" + phyarr.push(arma[i].phylum) 
- sam="" +
- fi # ELSE vytvori prazdny radek + phyarr.sort() 
- # Predchozi pozice vic zaznamu? + for (var i=0;i<phyarr.length;i++) 
- if [[ "$spoj" != "" ]]; then + { 
- echo "var n$i = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point($ox,$oy).transform(epsg4326,projectTo),{description:'<table class=\"hadtbl\">"$spoj"</table>'},{externalGraphic:'./$3',graphicHeight:24,graphicWidth:24,graphicXOffset:-12,graphicYOffset:-12});+ if(i==0
-    echo "$2.addFeatures(n$i);" +
- spoj="" + physel.innerHTML+="<option>"+phyarr[0]+"</option>
- sam="" + continue 
- fi+ } 
 + if(phyarr[i]!=phyarr[i-1]) 
 + physel.innerHTML+="<option>"+phyarr[i]+"</option>" 
 +
 + armageddon() // Populate the map with monsters... 
 +}
  
- bylo="$kde" +function gencla() { 
- spoj="<tr><td><a href=\"./det/$detid.htm\" target=\"_blank\">" + clasel.innerHTML="<option>ALL</option>" 
- if [[ "$obr" != "" ]]; then + ordsel.innerHTML="<option>ALL</option>" 
- spoj="$spoj<img src=\"./simg/$obr\" class=\"hadimg\"></a></td>" + famsel.innerHTML="<option>ALL</option>" 
- else + gensel.innerHTML="<option>ALL</option>" 
- spoj="$spoj<img src=\"./$3\" class=\"hadimg\"</a></td>" + spesel.innerHTML="<option>ALL</option>"
- fi +
- spoj="$spoj<td>$co<br>$kdy</td>" +
- spoj="$spoj</tr>"+
  
- sam="<a href=\"./det/$detid.htm\" target=\"_blank\"><img src=\"./simg/$obr\" alt=\"$co\" class=\"buttimg\"></a>" + var claarr=[] 
- sam="$sam<br><span class=\"butttext\"><b>Qualis:</b> $co<br>" + for (var i=0;i<arma.length-1;i++) 
- if [[ "$imp" != "" ]]; then + { 
- sam="$sam<b>Imperium:</b> $imp<br>" + if(physel.value==arma[i].phylum && arma.classis!="") 
- fi + claarr.push(arma[i].classis) 
- if [[ "$reg" !"" ]]; then + } 
- sam="$sam<b>Regnum:</b> $reg<br>" + claarr.sort() 
- fi + for (var i=0;i<claarr.length;i++) 
- if [[ "$phy" != "" ]]; then + { 
- sam="$sam<b>Phylum:</b> $phy<br>" + if(i==0) 
- fi + { 
- if [[ "$cla" != "" ]]; then + clasel.innerHTML+="<option>"+claarr[0]+"</option>" 
- sam="$sam<b>Classis:</b> $cla<br>" + continue 
- fi + } 
- if [[ "$ord" != "" ]]; then + if(claarr[i]!=claarr[i-1]) 
- sam="$sam<b>Ordo:</b> $ord<br>" + clasel.innerHTML+="<option>"+claarr[i]+"</option>" 
- fi + } 
- if [[ "$fam" !"" ]]then + armageddon() // Populate the map with monsters... 
- sam="$sam<b>Familia:</b> $fam<br>" +}
- fi +
- if [[ "$gen" != "" ]]then +
- sam="$sam<b>Genus:</b> $gen<br>" +
- fi +
- if [[ "$spe" != "" ]]; then +
- sam="$sam<b>Specie:</b> $spe<br>" +
- fi +
- if [[ "$bio" !"" ]]; then +
- sam="$sam<b>Biotope:</b> $bio<br>" +
- fi +
- if [[ "$kdy" != "" ]]; then +
- sam="$sam<b>Quando:</b> $kdy<br>" +
- fi +
- sam="$sam<b>Locus:</b> $kde ($loc)<br>" +
- if [[ "$obs" != "" ]]; then +
- sam="$sam<b>Spectator:</b> $obs<br>" +
- fi +
- if [[ "$skop" != "" ]]; then +
- sam="$sam<b>Microscopium:</b> $skop ($skop_typ)<br>" +
- fi +
- if [[ "$eng" != "" ]]; then +
- sam="$sam<b>Amplificatio:</b> $eng<br>" +
- fi +
-# if [[ "$des" != "" ]]; then +
-# sam="$sam<b>Depictio:</b> $des<br>" +
-# fi +
- if [[ "$vid" != "" ]]; then +
- sam="$sam<b>Video:</b> <a href=\"$vid\" target=\"_blank\">$vid</a><br>" +
- fi +
- sam="$sam</span>"+
  
- #>&2 echo "$sam+function genord() { 
- >&2 echo "$co $obs"+ ordsel.innerHTML="<option>ALL</option>" 
 + famsel.innerHTML="<option>ALL</option>
 + gensel.innerHTML="<option>ALL</option>" 
 + spesel.innerHTML="<option>ALL</option>" 
 + var ordarr=[] 
 + for (var i=0;i<arma.length-1;i++) 
 +
 + if(clasel.value==arma[i].classis && arma[i].ordo!=""
 + ordarr.push(arma[i].ordo) 
 +
 + ordarr.sort() 
 + for (var i=0;i<ordarr.length;i++) 
 +
 + if(i==0) 
 +
 + ordsel.innerHTML+="<option>"+ordarr[0]+"</option>" 
 + continue 
 +
 + if(ordarr[i]!=ordarr[i-1]) 
 + ordsel.innerHTML+="<option>"+ordarr[i]+"</option>" 
 +
 + armageddon() // Populate the map with monsters... 
 +}
  
 +function genfam() {
 + famsel.innerHTML="<option>ALL</option>"
 + gensel.innerHTML="<option>ALL</option>"
 + spesel.innerHTML="<option>ALL</option>"
 + var famarr=[]
 + for (var i=0;i<arma.length-1;i++)
 + {
 + if(ordsel.value==arma[i].ordo && arma[i].familia!="")
 + famarr.push(arma[i].familia)
 + }
 + famarr.sort()
 + for (var i=0;i<famarr.length;i++)
 + {
 + if(i==0)
 + {
 + famsel.innerHTML+="<option>"+famarr[0]+"</option>"
 + continue
 + }
 + if(famarr[i]!=famarr[i-1])
 + famsel.innerHTML+="<option>"+famarr[i]+"</option>"
 + }
 + armageddon() // Populate the map with monsters...
 +}
  
- ox="$kdex+function gengen() { 
- oy="$kdey"+ gensel.innerHTML="<option>ALL</option>" 
 + spesel.innerHTML="<option>ALL</option>" 
 + var genarr=[] 
 + for (var i=0;i<arma.length-1;i++) 
 +
 + if(famsel.value==arma[i].familia && arma[i].genus!="") 
 + genarr.push(arma[i].genus) 
 +
 + genarr.sort() 
 + for (var i=0;i<genarr.length;i++) 
 +
 + if(i==0) 
 +
 + gensel.innerHTML+="<option>"+genarr[0]+"</option>" 
 + continue 
 +
 + if(genarr[i]!=genarr[i-1]) 
 + gensel.innerHTML+="<option>"+genarr[i]+"</option>" 
 +
 + //genspe() // ...and here we go 
 + armageddon() // Populate the map with monsters... 
 +}
  
 +function genspe()
 +{
 + spesel.innerHTML="<option>ALL</option>"
 + var spearr=[]
 + for (var i=0;i<arma.length-1;i++)
 + {
 + if(gensel.value==arma[i].genus && arma[i].specie!="")
 + spearr.push(arma[i].specie)
 + }
 + spearr.sort()
 + for (var i=0;i<spearr.length;i++)
 + {
 + if(i==0)
 + {
 + spesel.innerHTML+="<option>"+spearr[0]+"</option>"
 + continue
 + }
 + if(spearr[i]!=spearr[i-1])
 + spesel.innerHTML+="<option>"+spearr[i]+"</option>"
 + }
 + armageddon() // Populate the map with monsters...
 +}
  
- i=$(($i+1))+function armageddon() 
 +
 + var speval=document.getElementById("spe").value 
 + var genval=document.getElementById("gen").value 
 + var famval=document.getElementById("fam").value 
 + var ordval=document.getElementById("ord").value 
 + var claval=document.getElementById("cla").value 
 + var phyval=document.getElementById("phy").value 
 + var regval=document.getElementById("reg").value 
 + var a=[]
  
- # Precti XML, vyfiltruj jen to co ma prijit do mapy serad to dle umisteni + if(speval!="ALL"
- #  Umisteni je razene kvuli vic vzorkum z jednoho mista+
 + for(var i=0;i<arma.length-1;i++) 
 + if(arma[i].specie==speval && arma[i].genus==genval) // Check genus because of unknown "sp." 
 + a.push(arma[i]) 
 +
 + else if(genval!="ALL"
 +
 + for(var i=0;i<arma.length-1;i++) 
 + if(arma[i].genus==genval) 
 + a.push(arma[i]) 
 +
 + else if(famval!="ALL"
 +
 + for(var i=0;i<arma.length-1;i++) 
 + if(arma[i].familia==famval) 
 + a.push(arma[i]) 
 +
 + else if(ordval!="ALL"
 +
 + for(var i=0;i<arma.length-1;i++) 
 + if(arma[i].ordo==ordval) 
 + a.push(arma[i]) 
 +
 + else if(claval!="ALL"
 +
 + for(var i=0;i<arma.length-1;i++) 
 + if(arma[i].classis==claval) 
 + a.push(arma[i]) 
 +
 + else if(phyval!="ALL"
 +
 + for(var i=0;i<arma.length-1;i++) 
 + if(arma[i].phylum==phyval) 
 + a.push(arma[i]) 
 +
 + else if(regval!="ALL"
 +
 + for(var i=0;i<arma.length-1;i++) 
 + if(arma[i].regnum==regval) 
 + a.push(arma[i]) 
 +
 + else // Regnum: ALL 
 +
 + for(var i=0;i<arma.length-1;i++) 
 + a.push(arma[i]) 
 + }
  
-done <<< $(echo "$1"# Zere parametr spaget, nikoli $1 scriptu !!!+ icongeddon(a) 
 +}
  
-# Do not forget to print last line when WHILE ends! +function buggy() 
-if ["$sam" = "" ]]; then +
- sam="<table style=\"hadtbl\">$spoj</table>+ var p=[] 
-fi + for(var i=0;i<arma.length-1;i++) 
-echo "var n$= new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point($kdex,$kdey).transform(epsg4326,projectTo),{description:'"$sam"'},{externalGraphic:'./$3',graphicHeight:24,graphicWidth:24,graphicXOffset:-12,graphicYOffset:-12});+
-echo "$2.addFeatures(n$i);"+ if(arma[i].regnum==""|| 
 +      arma[i].phylum==""|| 
 +      arma[i].classis==""|| 
 +      arma[i].ordo==""|| 
 +      arma[i].familia==""|| 
 +      arma[i].genus=="") 
 +   p.push(arma[i]) 
 +
 + icongeddon(p) 
 +}
  
-# KONEC FCE SPAGETY !!!+function plostenkoidy() 
 +
 + var p=[] 
 + for(var i=0;i<arma.length-1;i++) 
 +
 + if(arma[i].phylum=="Platyhelminthes"
 + p.push(arma[i]) 
 +
 + icongeddon(p) 
 +}
  
-echo "var ALL = new OpenLayers.Layer.Vector('Overlay',{attribution:'<href=\"http://brmlab.cz\">Brmlab</a>'});" +function icongeddon(a
-spagety "$praseTC" "ALL" "biohazard.svg" +
-echo "map.addLayer(ALL);"+ //alert(a.length) // #thingies to show in the map
 + while(map.popups.length) 
 + map.removePopup(map.popups[0]) 
 + vectorLayerDynamic.destroyFeatures()
  
-echo "var laycon [vectorLayer,ALL];# Layer controls JS array + var bylo="" // Minula pozice 
-while IFS='' read -r spag || [[ -n "$spag" ]]; do + var sam="// HTML samostatneho zaznamu 
- echo "var $spag new OpenLayers.Layer.Vector('Overlay',{attribution:'<a href=\"http://brmlab.cz\">Brmlab</a>'});" + var osam="" // predchozi $sam 
- spg=$(echo "$praseTC| grep "<new-field-4>$spag</new-field-4>"+ var spoj="" // HTML had z popisu stejnych pozic 
- case "$spag" in + var ospoj="" // Predchozi spoj 
- "Animalia") + var ox="" // Old X 
- icon="animalia.png";; + var oy="" // Old Y 
- "Bacteria") + var datelog="" // Entries sorted by date for plaintext log 
- icon="bacteria.png";; + var i=0 // Iterator over a[] (needed after FOR
- "Fungi") + var n=[] // New points in the layer 
- icon="fungi.png";; + var muchicons=0 // How much Regnum's? 
- "Chromista"+ var samicon=ICON_biohazard // Icon 
- icon="chromista.png";; + var spojicon=ICON_biohazard // Icon
- "Plantae"+
- icon="plantae.svg";; +
- "Protista"+
- icon="protista.png";; +
- *) +
- icon="biohazard.svg";; +
- esac+
  
- spagety "$spg" "$spag" "$icon+ for(;i<a.length;i++) // -1 fix for last empty entry 
- echo "laycon.push($spag);+
-done <<< $(echo "$kingdoms")+ // Pokracujem v hadovi 
 + if(a[i].locus == bylo) 
 +
 + sam=""
 + spoj+="<tr><td>
 + spoj+='<a href="./det/'+a[i].detid+'.htm" target="_blank">' 
 + if(a[i].obr != "") 
 + spoj+='<img src="./simg/'+a[i].obr+'" class="hadimg"></a></td>' 
 + else 
 + spoj+='<img src=./"'+ICON_biohazard+'" class="hadimg"></a></td>' 
 + spoj+="<td>"+a[i].qualis+"<br>"+a[i].quando+"</td>" 
 + spoj+="</tr>" 
 + ox=a[i].x 
 + oy=a[i].y 
 + continue; 
 + }
  
-# Plostenky + if(a[i].specie=="sp.") 
-spg=$(echo "$praseTC" | grep "<phylum>Platyhelminthes</phylum>") + wikisp="https://en.wikipedia.org/wiki/"+a[i].genus 
-echo "var Platyhelminthes = new OpenLayers.Layer.Vector('Overlay',{attribution:'<href=\"http://brmlab.cz\">Brmlab</a>'});" + else 
-spagety "$spg" "Platyhelminthes" "plostenkoid.png" + wikisp="https://en.wikipedia.org/wiki/"+a[i].genus+" "+a[i].specie
-echo "laycon.push(Platyhelminthes)"+
  
 + // Bud prvni zaznam, nebo zmena pozice
  
-echo "var controls {" + // Predchozi pozice jen 1 zaznam? 
-echo " selector: new OpenLayers.Control.SelectFeature(laycon, { onSelectcreatePopuponUnselectdestroyPopup })+ if(sam != ""
-echo "};" +
-echo "map.addControl(controls['selector']);" + samicon=geticon(a,i-1) 
-echo "controls['selector'].activate();"+ n[i] = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point(ox,oy).transform(epsg4326,projectTo),{'description':sam},{'externalGraphic':samicon,'graphicHeight':24,'graphicWidth':24,'graphicXOffset':-12,'graphicYOffset':-12}); 
 + vectorLayerDynamic.addFeatures(n[i]); 
 + spoj="
 + sam="
 + } // ELSE vytvori prazdny radek 
 + // Predchozi pozice vic zaznamu? 
 + if(spoj!=""
 +
 + spojicon=geticon(a,i-1) 
 + n[i] = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point(ox,oy).transform(epsg4326,projectTo),{'description':"<table class=\"hadtbl\">"+spoj+"</table>"},{'externalGraphic':spojicon,'graphicHeight':24,'graphicWidth':24,'graphicXOffset':-12,'graphicYOffset':-12}); 
 + vectorLayerDynamic.addFeatures(n[i]); 
 + spoj="
 + sam="" 
 + }
  
 + bylo=a[i].locus
 + spoj='<tr><td><a href="./det/'+a[i].detid+'.htm" target="_blank">'
 + if(a[i].obr != "")
 + spoj+='<img src="./simg/'+a[i].obr+'" class="hadimg"></a></td>'
 + else
 + spoj+='<img src="./'+geticon(a,i)+'" class="hadimg"</a></td>'
 + spoj+='<td>'+a[i].qualis+'<br>'+a[i].quando+'</td>'
 + spoj+="</tr>"
  
  
 + sam='<a href="./det/'+a[i].detid+'.htm" target="_blank"><img src="./simg/'+a[i].obr+'" alt="'+a[i].qualis+'" class="buttimg"></a>'
 + sam+='<br><span class="butttext">'
 + sam+='<b>Qualis:</b> <a href="'+wikisp+'" target="_blank">'+a[i].qualis+'</a><br>'
 + if(a[i].imperium != "")
 + sam+='<b>Imperium:</b> <a href="https://en.wikipedia.org/wiki/'+a[i].imperium+'" target="_blank">'+a[i].imperium+'</a><br>'
 + if(a[i].regnum != "")
 +    sam+='<b>Regnum:</b> <a href="https://en.wikipedia.org/wiki/'+a[i].regnum+'" target="_blank">'+a[i].regnum+'</a><br>'
 + if(a[i].phylum != "")
 + sam+='<b>Phylum:</b> <a href="https://en.wikipedia.org/wiki/'+a[i].phylum+'" target="_blank">'+a[i].phylum+'</a><br>'
 + if(a[i].classis != "")
 + sam+='<b>Classis:</b> <a href="https://en.wikipedia.org/wiki/'+a[i].classis+'" target="_blank">'+a[i].classis+'</a><br>'
 + if(a[i].ordo != "")
 + sam+='<b>Ordo:</b> <a href="https://en.wikipedia.org/wiki/'+a[i].ordo+'" target="_blank">'+a[i].ordo+'</a><br>'
 + if(a[i].familia != "")
 + sam+='<b>Familia:</b> <a href="https://en.wikipedia.org/wiki/'+a[i].familia+'" target="_blank">'+a[i].familia+'</a><br>'
 + if(a[i].genus != "")
 + sam+='<b>Genus:</b> <a href="https://en.wikipedia.org/wiki/'+a[i].genus+'" target="_blank">'+a[i].genus+'</a><br>'
 + if(a[i].specie != "")
 + sam+='<b>Specie:</b> <a href="'+wikisp+'" target="_blank">'+a[i].specie+'</a><br>'
 + if(a[i].bio != "")
 + sam+="<b>Biotope:</b> "+a[i].bio+"<br>"
 + if(a[i].quando != "")
 + sam+="<b>Quando:</b> "+a[i].quando+"<br>"
 + sam+="<b>Locus:</b> "+a[i].locus+" ("+a[i].locplain+")<br>"
 + if(a[i].spec != "")
 +  sam+="<b>Spectator:</b> "+a[i].spec+"<br>"
 + if(a[i].micro != "")
 + sam+="<b>Microscopium:</b> "+a[i].micro+" ("+a[i].microtyp+")<br>"
 + if(a[i].amp != "")
 + sam+="<b>Amplificatio:</b> "+a[i].amp+"<br>"
 + /* if [[ "$des" != "" ]]; then
 + #   sam="$sam<b>Depictio:</b> $des<br>"
 + # fi */
 + if(a[i].vid != "")
 + sam+='<b>Video:</b> <a href="'+a[i].vid+'" target="_blank">'+a[i].vid+'</a><br>'
 + sam+="</span>"
  
 + ox=a[i].x
 + oy=a[i].y
 + } // Konec prochazeni a[]
  
-echo "function createPopup(feature) {" + // Do not forget to print last line when FOR ends! 
- echo " feature.popup new OpenLayers.Popup.FramedCloud('pop'," + samicon=geticon(a,i-1) 
- echo " feature.geometry.getBounds().getCenterLonLat()," + if(sam == "") 
- echo " null,+ sam='<table style="hadtbl">'+spoj+'</table>'
- echo " '<div class=\"markerContent\">'+feature.attributes.description+'</div>'," +
- echo " null," +
- echo " false," +
- echo " function() { controls['selector'].unselectAll(); }" +
- echo " );" +
- echo " //feature.popup.closeOnMove = true;" +
- echo " map.addPopup(feature.popup);" +
-echo "}"+
  
-echo "function destroyPopup(feature) {" + n[i]=new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point(a[i-1].x,a[i-1].y).transform(epsg4326,projectTo),{description:"'"+sam+"'"},{externalGraphic:samicon,graphicHeight:24,graphicWidth:24,graphicXOffset:-12,graphicYOffset:-12}); 
- echo " feature.popup.destroy();" + vectorLayerDynamic.addFeatures(n[i]);
- echo " feature.popup = null;" +
-echo "}"+
  
 +} // Konec armageddonu
  
-echo "function kinchange() {" +var laycon = [vectorLayer,vectorLayerDynamic];
- echo " kinsel=document.getElementById('kin');" +
- echo " kinopt=kinsel.options[kinsel.selectedIndex].text;" +
- echo " for (var map.layers.length - 1; i >= 1; i--) {" +
- echo " map.removeLayer(map.layers[i]);+
- echo " }" +
- echo " map.addLayer(window[kinopt])" +
-echo "}"+
  
-echo "function plostenkoid() {" +var controls {selector: new OpenLayers.Control.SelectFeature(laycon, { onSelect: createPopup, onUnselect: destroyPopup })}
- echo " for (var i=map.layers.length-1;i>=1;i--) {" +map.addControl(controls['selector']); 
- echo " map.removeLayer(map.layers[i]);" +controls['selector'].activate();
- echo " }" +
- echo " map.addLayer(Platyhelminthes)+
-echo "}"+
  
 +function createPopup(feature)
 +{
 + feature.popup = new OpenLayers.Popup.FramedCloud('pop',
 + feature.geometry.getBounds().getCenterLonLat(),
 + null,
 + '<div class="markerContent">'+feature.attributes.description+'</div>',
 + null,
 + false, // Close button?
 + function() { controls['selector'].unselectAll(); }
 + );
 + //feature.popup.closeOnMove = true;
 + map.addPopup(feature.popup);
 +}
  
-echo "</script>" +function destroyPopup(feature) { 
-echo "</html>"+ feature.popup.destroy(); 
 + feature.popup = null; 
 +
 + 
 +// Run armageddon on initial load 
 +armageddon() 
 +</code
 + 
 +==== Taxonomie dle rodoveho jmena ==== 
 + 
 +Script bere jako jediny parametr rodove jmeno a z wikipedie vyparsuje zbytek taxonomie. 
 +<code bash tax.sh> 
 +#!/bin/bash 
 + 
 +wat=$(wget -q -O - "https://en.wikipedia.org/wiki/Template:Taxonomy/$1" 2>/dev/null | tr -d '\n' | sed -e $'s/<\/tr>/<\/tr>\\n/g' | grep "<tr>" | sed -e 's/<[^>]*>//g' | grep -o -e "^[a-zA-Z]*:[a-zA-Z]*"
 + 
 +echo $(echo "$wat" | grep "Domain:"
 +echo $(echo "$wat" | grep "Kingdom:"
 +echo $(echo "$wat" | grep "Phylum:"
 +echo $(echo "$wat" | grep "Class:"
 +echo $(echo "$wat" | grep "Order:"
 +echo $(echo "$wat" | grep "Family:"
 +echo $(echo "$wat" | grep "Genus:")
 </code> </code>
project/bioosm/start.txt · Last modified: 2023/09/21 12:15 by sachy